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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4808818_4810603_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4808818 - 4810603
Intron Length:
1786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
TTTCCCTGCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTTTTTATCT
Flanking Amino Acid:
AVPAYRRPSSTTTACDPVVE
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.5
33.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
71.9
0.49
0.9
65.7
36
Minor 5ss
42.7
-0.8
2.8
58.2
40.5
Minor BPS
70.1
0.71
1.5
85.55
34.8

Associated Gene:

Gene:
VGLL4
Ensembl Gene ID:
ENSAPLG00000010053
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031325
4767989 - 4810872
42884
ENSAPLT00000028860
4712417 - 4810872
98456
ENSAPLT00000026185
4723605 - 4810872
87268
ENSAPLT00000010473
4731089 - 4813150
82062
ENSAPLT00000038349
4767493 - 4813150
45658