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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4833891_4874971_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4833891 - 4874971
Intron Length:
41081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TATTCTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
ACTCCACAAACT
Flanking Amino Acid:
ILFVSCWGIFDLGHER*
Intron Amino Acid Position:
730

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
81.3
33.2
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
82.6
0.73
0.9
77
36.8
Minor 5ss
42.8
-0.8
3.4
61.3
44.6
Minor BPS
44.8
-0.3
2.2
66.01
44

Associated Gene:

Gene:
ATG7
Ensembl Gene ID:
ENSAPLG00000010216
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029541
4833871 - 4930687
96817