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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_486834_533050_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
486834 - 533050
Intron Length:
46217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TGTCCCTCCACA
Flanking Amino Acid:
KEKENIHLREELHRRTQLQP
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
75.3
0.57
0.8
68.8
31.7
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
54
0.12
2
70.34
41.4

Associated Gene:

Gene:
ERC2
Ensembl Gene ID:
ENSAPLG00000003881
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003970
431216 - 632752
201537