Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4875063_4892115_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4875063 - 4892115

Intron Length:

17053

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGAAAA

5'SS Class:

strong_major

3'SS Sequence:

GTCGTTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAAATAT

U12 Branch Point Sequence:

ACGCAGATAAAT

Flanking Amino Acid:

LLHQETQAAEVPCLIYARVF

Intron Amino Acid Position:

700

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.9

1.01

0.7

23.7

Major BPS

59.7

0.24

1.1

55.7

39.9

Major PPT

82.9

0.74

0.9

80.2

37.3

Minor 5ss

32.8

-2

2.9

39.7

45.8

Minor BPS

37.4

-0.8

2.2

51.21

42.3

Associated Gene:

Gene:

ATG7

Ensembl Gene ID:

ENSAPLG00000010216

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029541

4833871 - 4930687

96817