About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4892239_4907348_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4892239 - 4907348
Intron Length:
15110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTGACA
Flanking Amino Acid:
FDKCTACSPKVLDQYEREGF
Intron Amino Acid Position:
659

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.5
40.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.9
0.74
1
80.1
37.1
Minor 5ss
39.5
-1.2
3
50.7
39.9
Minor BPS
73.1
0.72
1.4
83.34
30.2

Associated Gene:

Gene:
ATG7
Ensembl Gene ID:
ENSAPLG00000010216
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029541
4833871 - 4930687
96817
ENSAPLT00000029308
4832819 - 4930417
97599
ENSAPLT00000010703
4887022 - 4930687
43666
ENSAPLT00000043848
4832819 - 4930687
97869
ENSAPLT00000034360
4832819 - 4930687
97869