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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4899393_4907348_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4899393 - 4907348
Intron Length:
7956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTACAGGATT
Flanking Amino Acid:
FDKCTACSPKKCFQDTFFCS
Intron Amino Acid Position:
659

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.5
40.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83.1
0.74
0.9
77.1
37.1
Minor 5ss
39.5
-1.2
3
50.7
39.9
Minor BPS
49.6
0.05
2
78.17
37.8

Associated Gene:

Gene:
ATG7
Ensembl Gene ID:
ENSAPLG00000010216
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039237
4899357 - 4930687
31331