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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4916064_4919073_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4916064 - 4919073
Intron Length:
3010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TATTTCCATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCTATTAAGT
Flanking Amino Acid:
DRLQKIFPGVNSEGYNMSIP
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.8
86.3
28.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80
0.68
0.9
74.8
34.8
Minor 5ss
39.6
-1.2
3.2
55.5
42.8
Minor BPS
60
0.39
1.9
82.31
38.7

Associated Gene:

Gene:
ATG7
Ensembl Gene ID:
ENSAPLG00000010216
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010703
4887022 - 4930687
43666
ENSAPLT00000034360
4832819 - 4930687
97869
ENSAPLT00000030074
4894789 - 4930687
35899
ENSAPLT00000043848
4832819 - 4930687
97869
ENSAPLT00000029541
4833871 - 4930687
96817
ENSAPLT00000039237
4899357 - 4930687
31331
ENSAPLT00000029308
4832819 - 4930417
97599
ENSAPLT00000039184
4906011 - 4930687
24677