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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4919233_4919805_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4919233 - 4919805
Intron Length:
573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTGTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTATAT
U12 Branch Point Sequence:
TTATATACAAAT
Flanking Amino Acid:
LGCSVARTLMGWGVRKITFV
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
70.4
0.51
1
67.1
39.4
Major PPT
80.8
0.69
0.8
80.8
31.3
Minor 5ss
40.3
-1.1
3.1
56.2
42.2
Minor BPS
45.6
-0.2
2
68.92
41.1

Associated Gene:

Gene:
ATG7
Ensembl Gene ID:
ENSAPLG00000010216
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030074
4894789 - 4930687
35899
ENSAPLT00000043848
4832819 - 4930687
97869
ENSAPLT00000029541
4833871 - 4930687
96817
ENSAPLT00000039237
4899357 - 4930687
31331
ENSAPLT00000029308
4832819 - 4930417
97599
ENSAPLT00000039184
4906011 - 4930687
24677
ENSAPLT00000010703
4887022 - 4930687
43666
ENSAPLT00000034360
4832819 - 4930687
97869