About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4919951_4921937_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4919951 - 4921937
Intron Length:
1987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTTTA
5'SS Class:
major
3'SS Sequence:
TTTTCTGTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
TTTTCTGTCATA
Flanking Amino Acid:
VNLSECMDPKRLAESSVDLN
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
77.9
32.4
Major BPS
66.1
0.4
1
73
31.5
Major PPT
80.2
0.68
0.8
76.3
32.4
Minor 5ss
46.2
-0.4
2.4
58.8
45.7
Minor BPS
50.9
0.02
2.3
74.34
38.4

Associated Gene:

Gene:
ATG7
Ensembl Gene ID:
ENSAPLG00000010216
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030074
4894789 - 4930687
35899
ENSAPLT00000043848
4832819 - 4930687
97869
ENSAPLT00000029541
4833871 - 4930687
96817
ENSAPLT00000039237
4899357 - 4930687
31331
ENSAPLT00000029308
4832819 - 4930417
97599
ENSAPLT00000039184
4906011 - 4930687
24677
ENSAPLT00000010703
4887022 - 4930687
43666
ENSAPLT00000034360
4832819 - 4930687
97869