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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4925437_4926638_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4925437 - 4926638
Intron Length:
1202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATACTTA
5'SS Class:
weak_major
3'SS Sequence:
TTTTTGCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
TTTCAGTTATCT
Flanking Amino Acid:
CLGDRFSLNQIQALQKAYDD
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
70
36.8
Major BPS
64.7
0.37
1
73
31.5
Major PPT
86.8
0.83
0.7
85.5
29.2
Minor 5ss
60.1
0.34
2.5
73
44
Minor BPS
48.7
-0
2.4
78.58
43.2

Associated Gene:

Gene:
ATG7
Ensembl Gene ID:
ENSAPLG00000010216
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030074
4894789 - 4930687
35899
ENSAPLT00000043848
4832819 - 4930687
97869
ENSAPLT00000029541
4833871 - 4930687
96817
ENSAPLT00000039237
4899357 - 4930687
31331
ENSAPLT00000029308
4832819 - 4930417
97599
ENSAPLT00000039184
4906011 - 4930687
24677
ENSAPLT00000010703
4887022 - 4930687
43666
ENSAPLT00000034360
4832819 - 4930687
97869