About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4927409_4928682_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4927409 - 4928682
Intron Length:
1274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
CTATCAATGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATCAAT
U12 Branch Point Sequence:
CTATCAATGACA
Flanking Amino Acid:
KSLLEKEANEIWQSIKSGAA
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
84.8
28.2
Major BPS
69.1
0.47
1.2
77
34.1
Major PPT
64
0.32
1.1
58.6
40.8
Minor 5ss
40.3
-1.1
3.3
55.3
48.9
Minor BPS
49.8
-0
1.9
65.65
40.3

Associated Gene:

Gene:
ATG7
Ensembl Gene ID:
ENSAPLG00000010216
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010703
4887022 - 4930687
43666
ENSAPLT00000034360
4832819 - 4930687
97869
ENSAPLT00000043848
4832819 - 4930687
97869
ENSAPLT00000030074
4894789 - 4930687
35899
ENSAPLT00000029541
4833871 - 4930687
96817
ENSAPLT00000039237
4899357 - 4930687
31331
ENSAPLT00000029308
4832819 - 4930417
97599
ENSAPLT00000039184
4906011 - 4930687
24677