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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4930264_4930497_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4930264 - 4930497
Intron Length:
234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGCAGA
5'SS Class:
major
3'SS Sequence:
GCTTTTTGTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTAAAA
Flanking Amino Acid:
PKVIKGYYYNGDPLGLPARL
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
63.3
42.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.6
0.58
0.9
69.2
41.8
Minor 5ss
45
-0.5
2.6
54.4
44.8
Minor BPS
70.8
0.65
1.5
81.76
32.7

Associated Gene:

Gene:
ATG7
Ensembl Gene ID:
ENSAPLG00000010216
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030074
4894789 - 4930687
35899
ENSAPLT00000043848
4832819 - 4930687
97869
ENSAPLT00000029541
4833871 - 4930687
96817
ENSAPLT00000039237
4899357 - 4930687
31331
ENSAPLT00000010703
4887022 - 4930687
43666
ENSAPLT00000039184
4906011 - 4930687
24677
ENSAPLT00000034360
4832819 - 4930687
97869