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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_4948817_4949876_R

Intron Information:

Intron Rank:
153569
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
4948817 - 4949876
Intron Length:
1060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCTCGGAA
5'SS Class:
weak_major
3'SS Sequence:
TTTTTCTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
ATATTCTGAAGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.4
0.08
1.4
52.8
40.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
88.3
0.86
0.6
82.1
30
Minor 5ss
35.6
-1.6
3.4
46.7
48.7
Minor BPS
51.9
-0
1.8
59.25
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030091
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029661
4948197 - 4957315
9119