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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5074750_5076035_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5074750 - 5076035
Intron Length:
1286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATATGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CATTTCTTATTT
Flanking Amino Acid:
FECISISWCYGVNRFYDNIQ
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
82.9
29.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82
0.72
0.8
78.8
33.7
Minor 5ss
45.6
-0.5
3
63.7
43.1
Minor BPS
63.7
0.51
1.6
76.26
41

Associated Gene:

Gene:
SLC6A1
Ensembl Gene ID:
ENSAPLG00000010815
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011302
5072308 - 5086515
14208