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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5076842_5078272_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5076842 - 5078272
Intron Length:
1431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACATTG
5'SS Class:
major
3'SS Sequence:
ACTTTACTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTTGTAACT
Flanking Amino Acid:
MLLMLGIDSQFCTVEGFITA
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1.1
72.5
39.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.8
0.72
0.8
78.3
34.5
Minor 5ss
47.1
-0.3
2.9
64.8
46.5
Minor BPS
63.3
0.49
2
83.9
37.2

Associated Gene:

Gene:
SLC6A1
Ensembl Gene ID:
ENSAPLG00000010815
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011302
5072308 - 5086515
14208