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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5080294_5080613_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5080294 - 5080613
Intron Length:
320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTATCTTTATTC
Flanking Amino Acid:
SYNPFHNNVYRDSIIVCCIN
Intron Amino Acid Position:
317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
82.4
0.73
0.9
74.2
39.7
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
67.3
0.52
1.5
74.84
36.2

Associated Gene:

Gene:
SLC6A1
Ensembl Gene ID:
ENSAPLG00000010815
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011302
5072308 - 5086515
14208