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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5082495_5082614_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5082495 - 5082614
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTTGA
5'SS Class:
major
3'SS Sequence:
TTGCTTATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
GCTTGCTTATTC
Flanking Amino Acid:
NMTSAVVEFWERNMHQMTDG
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
68.7
39.1
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
77.8
0.62
0.9
70.6
39.9
Minor 5ss
40.8
-1
2.8
45.7
43.5
Minor BPS
50.4
-0
2
62.5
43.5

Associated Gene:

Gene:
SLC6A1
Ensembl Gene ID:
ENSAPLG00000010815
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011302
5072308 - 5086515
14208