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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5085377_5086094_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5085377 - 5086094
Intron Length:
718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCTTG
5'SS Class:
weak_major
3'SS Sequence:
TACTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTACTT
Flanking Amino Acid:
FPYLCGKNGGGAFLIPYFLT
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.4
41.2
Major BPS
100
1.24
0.5
100
0
Major PPT
82.6
0.73
0.7
81.2
30.4
Minor 5ss
62.5
0.42
2.3
72.7
44.5
Minor BPS
67.9
0.64
1.9
89.07
35.8

Associated Gene:

Gene:
SLC6A1
Ensembl Gene ID:
ENSAPLG00000010815
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011302
5072308 - 5086515
14208