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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5165648_5175900_R

Intron Information:

Intron Rank:
132886
Intron Class:
major
Intron Phase:
Intron Coordinates:
5165648 - 5175900
Intron Length:
10253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
AATTTTTCCTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATTTAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
100
1.24
0.5
100
0
Major PPT
68.6
0.42
1.1
72.6
37
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
61.9
0.45
1.8
82.33
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018720
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030127
5165610 - 5180831
15222