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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5175944_5176019_R

Intron Information:

Intron Rank:
132887
Intron Class:
major
Intron Phase:
Intron Coordinates:
5175944 - 5176019
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCTGAC
5'SS Class:
major
3'SS Sequence:
CTTTGCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAC
U12 Branch Point Sequence:
GTCACCTTCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.2
66.7
39.6
Major BPS
65.1
0.38
1.1
68.9
36.5
Major PPT
83.2
0.75
0.8
77.2
31.6
Minor 5ss
37.1
-1.5
3.4
51.5
45.7
Minor BPS
59.6
0.28
1.8
67.92
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018720
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030127
5165610 - 5180831
15222