About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5228225_5229550_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5228225 - 5229550
Intron Length:
1326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
CTGCTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
CTCTGCTTATTT
Flanking Amino Acid:
WMVLTPGICAGIFIFFLVKY
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
80
0.67
0.9
77.4
35.6
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
51.9
0.14
2.1
70.91
46.7

Associated Gene:

Gene:
SLC6A11
Ensembl Gene ID:
ENSAPLG00000006803
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007081
5225996 - 5315781
89786