About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5236879_5238283_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5236879 - 5238283
Intron Length:
1405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAC
U12 Branch Point Sequence:
AACTGTTTACTT
Flanking Amino Acid:
GVPIAEVAESGPGLAFIAYP
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25.9
Major BPS
64.6
0.36
1
71.3
30.4
Major PPT
90.2
0.9
0.6
88.3
21.4
Minor 5ss
41.5
-0.9
2.7
53.7
43.5
Minor BPS
47.4
-0.1
2
62.51
42.5

Associated Gene:

Gene:
SLC6A11
Ensembl Gene ID:
ENSAPLG00000006803
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007081
5225996 - 5315781
89786