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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5238409_5244217_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5238409 - 5244217
Intron Length:
5809

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATCT
5'SS Class:
strong_major
3'SS Sequence:
TTTATATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTCTTATTT
Flanking Amino Acid:
SYNNYNNNCYRDCIMLCCLN
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
77
32.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.9
0.85
0.8
85.5
33.8
Minor 5ss
40.6
-1
3.1
57.9
46.2
Minor BPS
70.7
0.73
1.5
84.59
36.2

Associated Gene:

Gene:
SLC6A11
Ensembl Gene ID:
ENSAPLG00000006803
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007081
5225996 - 5315781
89786