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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5244322_5274835_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5244322 - 5274835
Intron Length:
30514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GCTCTTTTAACC
Flanking Amino Acid:
PDLSRLSDPQVWVDAGTQIF
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.4
35.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
88.4
0.86
0.6
88.2
21.6
Minor 5ss
36.8
-1.5
3.3
48.1
47.6
Minor BPS
66.1
0.48
1.2
67.82
37.8

Associated Gene:

Gene:
SLC6A11
Ensembl Gene ID:
ENSAPLG00000006803
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007081
5225996 - 5315781
89786