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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5294889_5310365_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5294889 - 5310365
Intron Length:
15477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTGCA
5'SS Class:
major
3'SS Sequence:
CCCCCTTTGGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATTAT
U12 Branch Point Sequence:
TGCTCCAGTATT
Flanking Amino Acid:
NATSPVMEFWERRVLAISDG
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
68.8
36.4
Major BPS
67
0.42
1.3
60.1
46.3
Major PPT
66.7
0.38
0.9
64
31.1
Minor 5ss
34.2
-1.8
3.1
38.1
40.6
Minor BPS
46.3
-0.2
2
66.65
43.7

Associated Gene:

Gene:
SLC6A11
Ensembl Gene ID:
ENSAPLG00000006803
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007081
5225996 - 5315781
89786