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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5312114_5312272_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5312114 - 5312272
Intron Length:
159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAAAC
5'SS Class:
major
3'SS Sequence:
CTCTCCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
AGGTTTCTATTC
Flanking Amino Acid:
CWRKVCPLFEGIGYATQVIE
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1.1
75.1
35.1
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
78.8
0.65
0.7
69.6
31.2
Minor 5ss
39.3
-1.2
2.9
51.9
44.9
Minor BPS
43.6
-0.5
1.7
49.2
35.3

Associated Gene:

Gene:
SLC6A11
Ensembl Gene ID:
ENSAPLG00000006803
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007081
5225996 - 5315781
89786