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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_533126_544355_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
533126 - 544355
Intron Length:
11230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTATAATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTGTATAATT
Flanking Amino Acid:
KALQTVIEMKDTKIASLERN
Intron Amino Acid Position:
384

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
74.8
35.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
73.9
0.54
1
71.4
42.9
Minor 5ss
45.5
-0.5
3.1
65.3
46.1
Minor BPS
60
0.39
2
84.42
36.8

Associated Gene:

Gene:
ERC2
Ensembl Gene ID:
ENSAPLG00000003881
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003970
431216 - 632752
201537