Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5391785_5398409_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5391785 - 5398409

Intron Length:

6625

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTTAA

5'SS Class:

strong_major

3'SS Sequence:

TCCTCCATTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTCAT

U12 Branch Point Sequence:

CTTTCCTCCATT

Flanking Amino Acid:

FRGLNRIQTQIEVVNTFKSG

Intron Amino Acid Position:

1140

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.92

0.8

26.2

Major BPS

77.2

0.67

1.2

79.6

35.6

Major PPT

79.4

0.66

0.8

73.4

29.9

Minor 5ss

45.6

-0.5

2.5

57.6

47.1

Minor BPS

58.8

0.36

79.83

42.7

Associated Gene:

Gene:

ATP2B2

Ensembl Gene ID:

ENSAPLG00000006083

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036681

5391119 - 5694443

303325

ENSAPLT00000040922

5391365 - 5657398

266034

ENSAPLT00000035824

5382264 - 5694443

312180

ENSAPLT00000039499

5391119 - 5694443

303325

ENSAPLT00000027810

5391119 - 5694443

303325

ENSAPLT00000037447

5386898 - 5657283

270386

ENSAPLT00000037061

5386898 - 5694443

307546

ENSAPLT00000048282

5391119 - 5694443

303325