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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5396300_5396829_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5396300 - 5396829
Intron Length:
530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTACATTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AATTCATACACT
Flanking Amino Acid:
AFLSGCLSGCGSHLKKS*
Intron Amino Acid Position:
1170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.9
31.3
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
75.2
0.57
0.9
72.6
37
Minor 5ss
27.7
-2.6
3
29.3
37
Minor BPS
47.8
-0
2.3
72.86
43.6

Associated Gene:

Gene:
ATP2B2
Ensembl Gene ID:
ENSAPLG00000006083
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032091
5396178 - 5657283
261106