Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5398593 - 5402769

Intron Length:

4177

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCATC

5'SS Class:

strong_major

3'SS Sequence:

TTTATAATTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

CTTTTTATAATT

Flanking Amino Acid:

IGLGELVWGQVIATIPTSRL

Intron Amino Acid Position:

1093

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.7

0.98

0.8

85.3

32.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

0.63

0.9

75.6

38.2

Minor 5ss

43.9

-0.7

2.9

60.2

44.5

Minor BPS

63.1

0.49

1.6

79.74

Associated Gene:

Gene:

ATP2B2

Ensembl Gene ID:

ENSAPLG00000006083

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032091

5396178 - 5657283

261106

ENSAPLT00000037447

5386898 - 5657283

270386

ENSAPLT00000027810

5391119 - 5694443

303325

ENSAPLT00000037061

5386898 - 5694443

307546

ENSAPLT00000048282

5391119 - 5694443

303325

ENSAPLT00000006379

5381978 - 5694443

312466

ENSAPLT00000036681

5391119 - 5694443

303325

ENSAPLT00000040922

5391365 - 5657398

266034

ENSAPLT00000035824

5382264 - 5694443

312180

ENSAPLT00000039499

5391119 - 5694443

303325

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5398593_5402769_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: