Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5402878 - 5404262

Intron Length:

1385

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATGATT

5'SS Class:

strong_major

3'SS Sequence:

CTTTTCCTTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTTAC

U12 Branch Point Sequence:

ATTTACCCAATC

Flanking Amino Acid:

TIVLGTFAIQIVIVQFGGKP

Intron Amino Acid Position:

1057

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.4

0.79

84.4

Major BPS

78.8

0.71

0.9

69.7

37.1

Major PPT

85.7

0.8

0.6

81.4

23.6

Minor 5ss

38.3

-1.3

3.4

57.5

46.8

Minor BPS

48.9

-0.1

67.31

37.8

Associated Gene:

Gene:

ATP2B2

Ensembl Gene ID:

ENSAPLG00000006083

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032091

5396178 - 5657283

261106

ENSAPLT00000037447

5386898 - 5657283

270386

ENSAPLT00000027810

5391119 - 5694443

303325

ENSAPLT00000037061

5386898 - 5694443

307546

ENSAPLT00000048282

5391119 - 5694443

303325

ENSAPLT00000006379

5381978 - 5694443

312466

ENSAPLT00000036681

5391119 - 5694443

303325

ENSAPLT00000040922

5391365 - 5657398

266034

ENSAPLT00000035824

5382264 - 5694443

312180

ENSAPLT00000039499

5391119 - 5694443

303325

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5402878_5404262_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: