Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5404475 - 5407144

Intron Length:

2670

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGAAAG

5'SS Class:

strong_major

3'SS Sequence:

GTCTTATAACTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTTAT

U12 Branch Point Sequence:

TGTCTTATAACT

Flanking Amino Acid:

LTLIFTLLFVGEKMFKIDSG

Intron Amino Acid Position:

986

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.6

0.79

0.9

73.4

37.3

Major BPS

73.7

0.59

1.2

65.7

43.2

Major PPT

62.6

0.28

56.5

42.8

Minor 5ss

-1.9

2.9

37.5

41.1

Minor BPS

60.7

0.41

1.6

78.89

36.8

Associated Gene:

Gene:

ATP2B2

Ensembl Gene ID:

ENSAPLG00000006083

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035824

5382264 - 5694443

312180

ENSAPLT00000039499

5391119 - 5694443

303325

ENSAPLT00000032091

5396178 - 5657283

261106

ENSAPLT00000037447

5386898 - 5657283

270386

ENSAPLT00000027810

5391119 - 5694443

303325

ENSAPLT00000037061

5386898 - 5694443

307546

ENSAPLT00000048282

5391119 - 5694443

303325

ENSAPLT00000006379

5381978 - 5694443

312466

ENSAPLT00000036681

5391119 - 5694443

303325

ENSAPLT00000040922

5391365 - 5657398

266034

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5404475_5407144_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: