Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5407359 - 5415330

Intron Length:

7972

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGATTA

5'SS Class:

strong_major

3'SS Sequence:

TTTATCTCCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TCTAATTTATCT

Flanking Amino Acid:

VAFTGACITQDSPLKAVQML

Intron Amino Acid Position:

915

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.3

1.02

0.7

86.9

22.8

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

82.1

0.72

0.8

76.8

31.8

Minor 5ss

41.5

-0.9

3.1

48.2

Minor BPS

53.4

0.19

1.8

73.38

43.5

Associated Gene:

Gene:

ATP2B2

Ensembl Gene ID:

ENSAPLG00000006083

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032091

5396178 - 5657283

261106

ENSAPLT00000037447

5386898 - 5657283

270386

ENSAPLT00000027810

5391119 - 5694443

303325

ENSAPLT00000037061

5386898 - 5694443

307546

ENSAPLT00000048282

5391119 - 5694443

303325

ENSAPLT00000006379

5381978 - 5694443

312466

ENSAPLT00000036681

5391119 - 5694443

303325

ENSAPLT00000040922

5391365 - 5657398

266034

ENSAPLT00000035824

5382264 - 5694443

312180

ENSAPLT00000039499

5391119 - 5694443

303325

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5407359_5415330_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: