Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5415523 - 5416144

Intron Length:

622

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTATAATCT

5'SS Class:

major

3'SS Sequence:

TTAATTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTTAT

U12 Branch Point Sequence:

TTATTCTCAATT

Flanking Amino Acid:

LKKADVGFAMGIAGTDVAKE

Intron Amino Acid Position:

851

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.9

0.4

62.9

35.9

Major BPS

87.7

0.94

0.8

77.7

36.7

Major PPT

84.9

0.78

0.9

77.2

41.6

Minor 5ss

46.2

-0.4

2.9

62.7

43.9

Minor BPS

70.9

0.73

1.4

84.82

35.6

Associated Gene:

Gene:

ATP2B2

Ensembl Gene ID:

ENSAPLG00000006083

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032091

5396178 - 5657283

261106

ENSAPLT00000037447

5386898 - 5657283

270386

ENSAPLT00000027810

5391119 - 5694443

303325

ENSAPLT00000037061

5386898 - 5694443

307546

ENSAPLT00000048282

5391119 - 5694443

303325

ENSAPLT00000006379

5381978 - 5694443

312466

ENSAPLT00000036681

5391119 - 5694443

303325

ENSAPLT00000040922

5391365 - 5657398

266034

ENSAPLT00000035824

5382264 - 5694443

312180

ENSAPLT00000039499

5391119 - 5694443

303325

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5415523_5416144_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: