Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5416252 - 5423750

Intron Length:

7499

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

ACATTTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATACAT

U12 Branch Point Sequence:

TCGTATATACAT

Flanking Amino Acid:

SPTDKHTLVKGIIDSTQVEQ

Intron Amino Acid Position:

815

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.6

1.03

0.7

88.4

18.8

Major BPS

74.9

0.62

81.3

29.9

Major PPT

82.3

0.73

0.9

76.9

36.4

Minor 5ss

29.6

-2.3

2.6

32.7

42.2

Minor BPS

42.1

-0.5

58.61

44.4

Associated Gene:

Gene:

ATP2B2

Ensembl Gene ID:

ENSAPLG00000006083

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032091

5396178 - 5657283

261106

ENSAPLT00000037447

5386898 - 5657283

270386

ENSAPLT00000027810

5391119 - 5694443

303325

ENSAPLT00000037061

5386898 - 5694443

307546

ENSAPLT00000048282

5391119 - 5694443

303325

ENSAPLT00000006379

5381978 - 5694443

312466

ENSAPLT00000036681

5391119 - 5694443

303325

ENSAPLT00000040922

5391365 - 5657398

266034

ENSAPLT00000035824

5382264 - 5694443

312180

ENSAPLT00000039499

5391119 - 5694443

303325

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5416252_5423750_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: