Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5424911 - 5430130

Intron Length:

5220

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATATCAA

5'SS Class:

major

3'SS Sequence:

GTTGCTTTTGAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTCAT

U12 Branch Point Sequence:

TATCTCATATTT

Flanking Amino Acid:

VGIEDPVRPEVPEAIRKCQR

Intron Amino Acid Position:

726

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.6

0.65

69.2

Major BPS

86.1

0.9

0.7

85.7

22.9

Major PPT

71.3

0.48

1.1

71.4

38.6

Minor 5ss

-1.2

2.9

49.3

46.9

Minor BPS

49.3

0.03

1.8

71.36

39.5

Associated Gene:

Gene:

ATP2B2

Ensembl Gene ID:

ENSAPLG00000006083

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035824

5382264 - 5694443

312180

ENSAPLT00000039499

5391119 - 5694443

303325

ENSAPLT00000032091

5396178 - 5657283

261106

ENSAPLT00000037447

5386898 - 5657283

270386

ENSAPLT00000027810

5391119 - 5694443

303325

ENSAPLT00000037061

5386898 - 5694443

307546

ENSAPLT00000048282

5391119 - 5694443

303325

ENSAPLT00000006379

5381978 - 5694443

312466

ENSAPLT00000036681

5391119 - 5694443

303325

ENSAPLT00000040922

5391365 - 5657398

266034

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5424911_5430130_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: