Gene Search

Intron Rank:

Intron Class:

major_hybrid

Intron Phase:

Intron Coordinates:

5430366 - 5430945

Intron Length:

580

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTTCA

5'SS Class:

strong_major

3'SS Sequence:

TTAAATAAAAAAG|G

3'SS Class:

major_hybrid

U2 Branch Point Sequence:

AATTAAT

U12 Branch Point Sequence:

TTTTTCTTAAAT

Flanking Amino Acid:

SKGASEIVLKKCSRILNAAG

Intron Amino Acid Position:

647

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

80.5

27.6

Major BPS

0.82

0.8

24.9

Major PPT

48.8

-0

1.2

47.4

42.7

Minor 5ss

42.2

-0.9

2.7

50.9

39.6

Minor BPS

84.8

1.17

1.1

97.05

26.9

Associated Gene:

Gene:

ATP2B2

Ensembl Gene ID:

ENSAPLG00000006083

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032091

5396178 - 5657283

261106

ENSAPLT00000037447

5386898 - 5657283

270386

ENSAPLT00000027810

5391119 - 5694443

303325

ENSAPLT00000037061

5386898 - 5694443

307546

ENSAPLT00000048282

5391119 - 5694443

303325

ENSAPLT00000006379

5381978 - 5694443

312466

ENSAPLT00000036681

5391119 - 5694443

303325

ENSAPLT00000040922

5391365 - 5657398

266034

ENSAPLT00000035824

5382264 - 5694443

312180

ENSAPLT00000039499

5391119 - 5694443

303325

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5430366_5430945_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: