Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5431188 - 5455490

Intron Length:

24303

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGCTGG

5'SS Class:

major

3'SS Sequence:

TTCTTCTCTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTAAT

U12 Branch Point Sequence:

TTCTTCTCTACA

Flanking Amino Acid:

INSAYTTKILPPEKEGGLPR

Intron Amino Acid Position:

567

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.4

0.69

62.4

44.7

Major BPS

85.7

0.89

0.8

22.2

Major PPT

0.88

0.6

24.2

Minor 5ss

43.4

-0.7

2.9

52.7

46.4

Minor BPS

56.1

0.18

1.9

71.06

Associated Gene:

Gene:

ATP2B2

Ensembl Gene ID:

ENSAPLG00000006083

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035824

5382264 - 5694443

312180

ENSAPLT00000039499

5391119 - 5694443

303325

ENSAPLT00000032091

5396178 - 5657283

261106

ENSAPLT00000037447

5386898 - 5657283

270386

ENSAPLT00000027810

5391119 - 5694443

303325

ENSAPLT00000037061

5386898 - 5694443

307546

ENSAPLT00000048282

5391119 - 5694443

303325

ENSAPLT00000006379

5381978 - 5694443

312466

ENSAPLT00000036681

5391119 - 5694443

303325

ENSAPLT00000040922

5391365 - 5657398

266034

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5431188_5455490_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: