Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5457646 - 5459886

Intron Length:

2241

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGACTG

5'SS Class:

strong_major

3'SS Sequence:

TTTTTATTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTATTTTTATTT

Flanking Amino Acid:

TKLAVQIGKAGLVMSAITVI

Intron Amino Acid Position:

414

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.7

0.75

68.1

42.8

Major BPS

96.5

1.15

0.6

34.2

Major PPT

94.3

0.6

93.1

23.6

Minor 5ss

41.7

-0.9

3.1

48.1

Minor BPS

64.7

0.54

1.5

79.8

36.8

Associated Gene:

Gene:

ATP2B2

Ensembl Gene ID:

ENSAPLG00000006083

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040922

5391365 - 5657398

266034

ENSAPLT00000006379

5381978 - 5694443

312466

ENSAPLT00000036681

5391119 - 5694443

303325

ENSAPLT00000039499

5391119 - 5694443

303325

ENSAPLT00000035824

5382264 - 5694443

312180

ENSAPLT00000032091

5396178 - 5657283

261106

ENSAPLT00000037447

5386898 - 5657283

270386

ENSAPLT00000048282

5391119 - 5694443

303325

ENSAPLT00000027810

5391119 - 5694443

303325

ENSAPLT00000037061

5386898 - 5694443

307546

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5457646_5459886_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: