Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5471828 - 5480369

Intron Length:

8542

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATTTG

5'SS Class:

strong_major

3'SS Sequence:

TGTGTATTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATGCAT

U12 Branch Point Sequence:

GTATGCATAAGC

Flanking Amino Acid:

SVDKDPMLLSGTHVMEGSGR

Intron Amino Acid Position:

261

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.3

0.88

0.9

81.2

33.8

Major BPS

67.2

0.43

1.4

77.7

37.1

Major PPT

81.2

0.7

0.9

77.7

40.6

Minor 5ss

43.2

-0.7

2.9

57.8

46.8

Minor BPS

46.3

-0.3

2.2

61.04

43.7

Associated Gene:

Gene:

ATP2B2

Ensembl Gene ID:

ENSAPLG00000006083

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032091

5396178 - 5657283

261106

ENSAPLT00000037447

5386898 - 5657283

270386

ENSAPLT00000027810

5391119 - 5694443

303325

ENSAPLT00000037061

5386898 - 5694443

307546

ENSAPLT00000048282

5391119 - 5694443

303325

ENSAPLT00000006379

5381978 - 5694443

312466

ENSAPLT00000036681

5391119 - 5694443

303325

ENSAPLT00000040922

5391365 - 5657398

266034

ENSAPLT00000035824

5382264 - 5694443

312180

ENSAPLT00000039499

5391119 - 5694443

303325

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5471828_5480369_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: