Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5480496 - 5481537

Intron Length:

1042

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTACTGAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

TTTTTTTTACTG

Flanking Amino Acid:

VVGDIAQVKYGDLLPADGIF

Intron Amino Acid Position:

219

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.3

0.97

0.8

89.6

24.1

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

69.2

0.43

1.2

37.4

Minor 5ss

46.3

-0.4

2.8

64.1

41.5

Minor BPS

63.2

0.28

1.6

69.97

38.4

Associated Gene:

Gene:

ATP2B2

Ensembl Gene ID:

ENSAPLG00000006083

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032091

5396178 - 5657283

261106

ENSAPLT00000037447

5386898 - 5657283

270386

ENSAPLT00000027810

5391119 - 5694443

303325

ENSAPLT00000037061

5386898 - 5694443

307546

ENSAPLT00000048282

5391119 - 5694443

303325

ENSAPLT00000006379

5381978 - 5694443

312466

ENSAPLT00000036681

5391119 - 5694443

303325

ENSAPLT00000040922

5391365 - 5657398

266034

ENSAPLT00000035824

5382264 - 5694443

312180

ENSAPLT00000039499

5391119 - 5694443

303325

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5480496_5481537_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: