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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5481796_5561732_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5481796 - 5561732
Intron Length:
79937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
ATTGTCTTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATAAT
U12 Branch Point Sequence:
CTTTGCTTGACT
Flanking Amino Acid:
CRHLKTSPTEGCGTATGGAE
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
87.1
30
Major BPS
75.2
0.63
1.1
74.5
36.6
Major PPT
69.7
0.44
1
66.5
40
Minor 5ss
43
-0.8
2.9
57.2
47.1
Minor BPS
71.1
0.74
1.8
87.04
39.2

Associated Gene:

Gene:
ATP2B2
Ensembl Gene ID:
ENSAPLG00000006083
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037447
5386898 - 5657283
270386