Gene Search

Intron Rank:

Intron Class:

major-like

Intron Phase:

5UTR

Intron Coordinates:

5562216 - 5657178

Intron Length:

94963

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTATGTTGT

5'SS Class:

weak_major

3'SS Sequence:

TTTGTTCCCAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

ACTCTTCTAATG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.2

0.4

1.1

64.8

41.7

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

70.6

0.46

71.5

33.4

Minor 5ss

53.3

0.11

2.5

76.2

39.3

Minor BPS

47.5

-0.3

1.7

50.99

37.9

Associated Gene:

Gene:

ATP2B2

Ensembl Gene ID:

ENSAPLG00000006083

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035824

5382264 - 5694443

312180

ENSAPLT00000039499

5391119 - 5694443

303325

ENSAPLT00000032091

5396178 - 5657283

261106

ENSAPLT00000037447

5386898 - 5657283

270386

ENSAPLT00000027810

5391119 - 5694443

303325

ENSAPLT00000037061

5386898 - 5694443

307546

ENSAPLT00000048282

5391119 - 5694443

303325

ENSAPLT00000006379

5381978 - 5694443

312466

ENSAPLT00000036681

5391119 - 5694443

303325

ENSAPLT00000040922

5391365 - 5657398

266034

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5562216_5657178_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: