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Intron Name: Anas_platyrhynchos_platyrhynchos_13_5657284_5694282_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

5657284 - 5694282

Intron Length:

36999

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGCCTT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTCTTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATTAT

U12 Branch Point Sequence:

GTCTAATTATCT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

74.5

41.9

Major BPS

76.9

0.67

66.3

40.4

Major PPT

91.4

0.93

0.6

84.6

30.4

Minor 5ss

43.9

-0.7

3.2

62.5

43.1

Minor BPS

0.01

71.15

Associated Gene:

Gene:

ATP2B2

Ensembl Gene ID:

ENSAPLG00000006083

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036681

5391119 - 5694443

303325

ENSAPLT00000035824

5382264 - 5694443

312180

ENSAPLT00000048282

5391119 - 5694443

303325

ENSAPLT00000027810

5391119 - 5694443

303325

ENSAPLT00000039499

5391119 - 5694443

303325

ENSAPLT00000006379

5381978 - 5694443

312466

ENSAPLT00000037061

5386898 - 5694443

307546