About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5833402_5835082_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5833402 - 5835082
Intron Length:
1681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGGAAG
5'SS Class:
major
3'SS Sequence:
GTATGTCCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGTCAATTAATG
Flanking Amino Acid:
INRIQKLRKKRNLVPTDEIT
Intron Amino Acid Position:
979

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.2
70.7
40.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
73.5
0.53
1
65.7
40.9
Minor 5ss
28
-2.5
2.8
30.9
42.7
Minor BPS
50.4
-0.1
1.9
60.4
40.9

Associated Gene:

Gene:
IARS1
Ensembl Gene ID:
ENSAPLG00000005750
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006022
5822276 - 5912561
90286