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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5836525_5844155_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5836525 - 5844155
Intron Length:
7631

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GTGTGTTTATGC
Flanking Amino Acid:
ISSLEKYILEELNVRQVTLS
Intron Amino Acid Position:
851

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
78.7
0.65
1
73.7
40.9
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
43.9
-0.4
2.2
54.1
44.3

Associated Gene:

Gene:
IARS1
Ensembl Gene ID:
ENSAPLG00000005750
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006022
5822276 - 5912561
90286