Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5844543_5847564_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5844543 - 5847564

Intron Length:

3022

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGAAAC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTGACCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTTTGACC

Flanking Amino Acid:

SIHYLMLPQVREDLIDKKIE

Intron Amino Acid Position:

788

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.4

0.8

84.2

26.4

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

75.5

0.57

0.9

70.2

40.4

Minor 5ss

33.8

-1.8

2.9

42.8

44.4

Minor BPS

78.9

0.89

84.85

26.7

Associated Gene:

Gene:

IARS1

Ensembl Gene ID:

ENSAPLG00000005750

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006022

5822276 - 5912561

90286