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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5872440_5883203_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5872440 - 5883203
Intron Length:
10764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
AAAAAGTAAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCAAAA
U12 Branch Point Sequence:
GAATCAAAAAGT
Flanking Amino Acid:
SYKHSYPFCWREILIHAIPL
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
59.3
0.23
1
65.3
28.1
Major PPT
46.5
-0.2
1.1
33.6
39.5
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
40.3
-0.6
2.2
57.37
44.3

Associated Gene:

Gene:
IARS1
Ensembl Gene ID:
ENSAPLG00000005750
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006022
5822276 - 5912561
90286