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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5889097_5894617_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5889097 - 5894617
Intron Length:
5521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACATGAA
5'SS Class:
major
3'SS Sequence:
TATATATGAAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATGTTCTTAATA
Flanking Amino Acid:
DTEYEILERQHIFVLQCKDK
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.1
64.8
35
Major BPS
80
0.75
1
78.6
31
Major PPT
52.6
0.06
1.2
53.8
43.9
Minor 5ss
32
-2.1
3.4
38.9
44.8
Minor BPS
76.3
0.82
1.1
77.05
34.1

Associated Gene:

Gene:
IARS1
Ensembl Gene ID:
ENSAPLG00000005750
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006022
5822276 - 5912561
90286