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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_5894710_5895342_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5894710 - 5895342
Intron Length:
633

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATGTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTATATAACT
Flanking Amino Acid:
NPELQYVKLRDNATGKIYIL
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.6
1.17
0.7
96.8
6.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81
0.7
0.9
73.8
41.4
Minor 5ss
26.9
-2.6
4.1
42.9
44.7
Minor BPS
63.5
0.5
1.8
84.6
35.3

Associated Gene:

Gene:
IARS1
Ensembl Gene ID:
ENSAPLG00000005750
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006022
5822276 - 5912561
90286